Template:Brain region

From Brede Wiki
Jump to: navigation, search

This template is to describe a brain region. It format an infobox and construct links to BAMS, BrainInfo, BrainMaps.org, brainSCANr, Brede Database, Connectome, IBVD, NeuroLex, PubBrain, Wikipedia, DOAJ, NIF, Open J-Gate and SumsDB.

Links are also made to labels in brain atlases: AAL, Hammers atlas, Harvard-Oxford Atlas and LPBA40

{{Brain region
  | name = 
  | abbreviation1 = 
  | abbreviation2 = 
  | parent1 = 
  | parent2 =
  | child1 = 
  | child2
  | variation1 = 
  | variation2 =
  | aidi =
  | braininfoid = 
  | connectomewiki = 
  | aal =
  | fmaid = 
  | hammers = 
  | hocpa = 
  | hospa = 
  | lpba = 
  | neurolex = 
  | wikidata = 
  | wikipedia = 
  | woroi = 
}}

[edit] Fields

aal 
Integer identifier for the AAL atlas.
abbreviation1 
Abbreviation for the brain region.
aidi 
Brain region identifier for the BAMS.
braininfo 
Old deprecated integer identifier for BrainInfo/NeuroNames.
braininfoid 
Unique identifier for BrainInfo/NeuroNames
child1 
Taxonomic child brain region (subregion) (skos:narrower).
child2 
Another taxonimic child brain region (skos:narrower).
connectomewiki 
Wiki page for the brain region in the ConnectomeWiki.
fmaid 
Foundational Model of Anatomy identifier
hammers 
Identifier for the Hammers atlas
hocpa 
Identifier for the cortical Harvard-Oxford Atlas
hospa 
Identifier for the subcortical Harvard-Oxford Atlas
ibvd 
Name for the Internet Brain Volume Database, e.g., "Putamen"
mesh 
MeSH term for brain region, e.g., "Gyrus Cinguli"
mesh_uid 
MeSH unique identifier for the brain region
name 
Canonical name for the brain region (skos:prefLabel)
neurolex 
Name for brain region in the NeuroLex semantic wiki.
lpba 
Identifier for the LONI Probabilistic Brain Atlas as distributed in SRI24.
neurolex 
String for the brain region in the NeuroLex wiki. Do not prefix it with "Category".
parent1 
Taxonomic parent brain region (superregion) (skos:broader).
parent2 
Another taxonomic parent brain region (skos:broader).
variation1 
Naming variation (skos:altLabel).
variation2 
A third name (skos:altLabel).
wikidata 
Identifier in Wikidata, e.g., "Q744385" [1].
wikipedia 
Title of corresponding Wikipedia page
woroi 
Brain region integer identifier from the Brede Database

[edit] Example

{{Brain region | name = Left posterior cingulate gyrus | parent1 = Posterior cingulate gyrus | parent2 = Left | woroi = 6 | hammers = 140 | aal = 35 | variation1 = Left posterior cingulate | variation2 = Posterior cingulate gyrus, left | variation3 = Gyrus cinguli posterior, left }}


Personal tools