Biomedical named entity recognition

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Biomedical named entity recognition
Variations:

Biological named entity recognition

Category: Biomedical named entity recognition
Parents:

Named entity recognition

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Biomedical named entity recognition is named entity recognition applied in the field of biomedicine.

Contents

[edit] Annotated corpora

  1. GENIA
  2. BioCreAtIvE II Gene Mention

[edit] Recognized entities

The recognized entities may, e.g., be:[1]

[edit] Tools

[edit] Features

See e.g.[3]

  1. Capitalized
  2. Mixed case
  3. Suffix = 'ase'
  4. Alphanumeric
  5. Has dash
  6. Roman numeral
  7. Collins word class[4]
  1. "brief word class" (BWC)

[edit] Papers

  1. Biomedical named entity recognition using conditional random fields and rich feature sets
  2. GENETAG: a tagged corpus for gene/protein named entity recognition
  3. Identifying gene and protein mentions in text using conditional random fields
  4. Overview of BioCreative II gene mention recognition
  5. Recognizing biomedical named entities using skip-chain conditional random fields

[edit] References

  1. Biomedical named entity recognition using conditional random fields and rich feature sets
  2. http://pages.cs.wisc.edu/~bsettles/abner/
  3. Biomedical named entity recognition using conditional random fields and rich feature sets
  4. Ranking algorithms for named-entity extraction: boosting and the voted perceptron
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