BSA Atlas

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BSA Atlas
Variations:

Brainvisa Sulci atlas

Category: BSA Atlas
Parents:

Human brain atlas
BrainVISA

Children:
Databases:
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Papers: DOAJ Google Scholar PubMed
Ontologies: MeSH NeuroLex Wikidata Wikipedia
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BSA Atlas (Brainvisa Sulci atlas) is a human brain atlas associated with the BrainVISA program.

Contents

[edit] Python

See link at http://www.lnao.fr/spip.php?article229

[edit] Reading labels

The site here seems to be no longer available.

import pandas as pd
 
url = 'http://lnao.lixium.fr/IMG/csv/anat_landmark_atlas.csv'
labels = pd.read_csv(url)

Comparison with Brede neuroanatomy words:

from brede.data.words import NeuroanatomyWords
 
set(labels.label.str.lower()) - NeuroanatomyWords()

[edit] Reading volume

Reading the volume with NIPY and showing a slice with matplotlib:

>>> from urllib import urlretrieve
>>> import nipy
>>> urlretrieve('ftp://ftp.cea.fr/pub/dsv/anatomist/data/anat_landmark_atlas.nii.gz', 
                'anat_landmark_atlas.nii.gz')
>>> img = nipy.load_image('anat_landmark_atlas.nii.gz')
>>> img.shape
(91, 109, 91, 145)
 
>>> import numpy as np
>>> import matplotlib.pyplot as plt
>>> plt.matshow(np.sum(img[:, :, 40, :], axis=-1))
>>> plt.show()

[edit] Papers

  1. Joint Bayesian cortical sulci recognition and spatial normalization
  2. Cortical sulci recognition and spatial normalization
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