brede_roi_roi2html

PURPOSE

SYNOPSIS

DESCRIPTION

 brede_roi_roi2html   - Convert 'roi' structure to HTML

      brede_roi_roi2html(R, 'PropertyName', 'PropertyValue')

      Input:    R       'Roi' structure

      Property: Bib     'Bib' structures 
                Output  [ {files} | summary ]

      Output:   s       HTML string

      Construct a set of HTML files from the information in the 'roi'
      structures each containing information about a brain region.

      If 'output'='summary' then strings will be returned with HTML
      formatting of the individual structures and no files are
      written.

      Example:
        froi = fullfile(fileparts(which('brede')), 'xml', 'worois.xml');
        R = brede_read_xml(froi, 'output', 'collapsesecond');
        brede_roi_roi2html(R)

        % With access to wobibs.mat
        load wobibs
        brede_roi_roi2html(R, 'Bib', B)

      See also BREDE, BREDE_ROI, BREDE_BIB, BREDE_ROI_ROI2HTML_ALPHA,
               BREDE_ROI_ROI2HTML_HAM, BREDE_ROI_ROI2HTML_TZOUR,
               BREDE_URL_COCOMACSITE, BREDE_URL_IBVDNAME.

 $Id: brede_roi_roi2html.m,v 1.19 2006/07/05 15:10:34 fn Exp $

CROSS-REFERENCE INFORMATION

• brede_bib_bib2html brede_bib_bib2html - Convert 'Bib' structure to HTML
• brede_bib_bib2loc brede_bib_bib2loc - Convert 'bib' to 'loc'
• brede_bib_bib2mat brede_bib_bib2mat - Generate matrix from 'Bib' structure
• brede_html_close_jerne brede_html_close_jerne - Close a HTML file in the jerne style
• brede_html_list brede_html_list - Make a HTML with a list
• brede_html_open_jerne brede_html_open_jerne - Open a file and write a "Jerne" header
• brede_loc_loc2coord brede_loc_loc2coord - Return coordinates from loc structure
• brede_loc_loc2html brede_loc_loc2html - Write locations to HTML file
• brede_loc_select brede_loc_select - Select fields or 'loc' structures
• brede_mat_descendants brede_mat_descendants - Find descendants
• brede_mat_elimstop brede_mat_elimstop - Eliminate stop words
• brede_mat_plot_count brede_mat_plot_count - Plot row or columns summeratization
• brede_read_txtlines brede_read_txtlines - Read file with text lines
• brede_roi_roi2mat brede_roi_roi2mat - Convert 'roi' structures to 'mat' structure
• brede_roi_roi2str brede_roi_roi2str - Convert 'roi' structure to string
• brede_str_split brede_str_split - Split a string into substring
• brede_str_str2mat brede_str_str2mat - Convert string into a 'Mat' structure
• brede_struct_field2cellstr brede_struct_field2cellstr - Convert field to cellstr
• brede_struct_getelement brede_struct_getelement - Get element from a field.
• brede_struct_select brede_struct_select - Select fields from structures
• brede_ta3_frame brede_ta3_frame - Construct 3D Talairach Frame
• brede_ta3_grid brede_ta3_grid - Construct 3D Talairach grid
• brede_ta3_loc brede_ta3_loc - Construct 3D Talairach locations (points)
• brede_ta3_view brede_ta3_view - Set viewpoint
• brede_url_braininfo brede_url_braininfo - Return URL to BrainInfo
• brede_url_cocomacsite brede_url_cocomacsite - Construct CocoMac Site URL
• brede_url_ibvdname brede_url_ibvdname - Construct URL for IBVD name
• brede_url_meshuid brede_url_meshuid - Generate URL to MeSH unique identifier
• brede_url_wikipedia brede_url_wikipedia - Generate URL to MeSH unique identifier
• brede_url_woroi brede_url_woroi - Construct URL from WOROI
• brede_write_dot brede_write_dot - Write GraphViz dot file
• brede_write_png brede_write_png - Write a PNG file

• brede_mat_2mat2html brede_mat_2mat2html - Convert two matrices to HTML
• brede_mat_mat2html brede_mat_mat2html - Convert 'mat' structure to HTML
• brede_ui_roi brede_ui_roi - UI for editing 'Roi' structure
• brede_ui_rois brede_ui_rois - UI for editing 'Rois' structure