brede_ta3

(export/brede/brede_ta3.m)

Function Synopsis

varargout = brede_ta3(varargin)

Help text

 brede_ta3            - Overview of 'ta3' functions

       Functions:
         brede_ta3_aal        - Display the AAL segmented images
         brede_ta3_axes       - Display axes
         brede_ta3_axlabel    - Make axis labels
         brede_ta3_bib        - Plot 'bib' locations in 3D
         brede_ta3_brodnum    - Plot Brodmann numbers in 3D
         brede_ta3_concortex  - Talairach cortex 
         brede_ta3_contour    - Talairach cortex contour
         brede_ta3_drury      - Visible human 
         brede_ta3_exp        - Plot 'exp' locationss
         brede_ta3_eyes       - Add eyes to 3D
         brede_ta3_frame      - Initial frame
         brede_ta3_grid       - Plot grid
         brede_ta3_light      - Add light sources
         brede_ta3_loc        - Plot locations in 3D
         brede_ta3_movie      - Make a AVI movie 
         brede_ta3_patch      - Add Face set
         brede_ta3_patchwall  - Project the patch on the wall
         brede_ta3_tick       - Adjust tick marks
         brede_ta3_view       - Set viewpoint
         brede_ta3_volslice   - Plot a 'vol' as a single slice
         brede_ta3_volsurf    - Plot a 'vol' as a 
 
       All functions with the 'brede_ta3' prefix will make a 3-
       dimensional plot in a Matlab window suitable for volume and
       points in Talairach space (or MNI space). The units of the
       plot are in meters. 

       The brede_ta3_frame will setup an initial frame and subsequent
       material can be added, eg, with the brede_ta3_loc function for
       Talairach points or with the brede_ta3_volslice or
       brede_ta3_volsurf functions for volumes. Besides the computer
       memory there is no limitations on the number of volumes and
       points that can be added to the plot. 

       Somewhat better (or just different) navigation in 3D can be
       obtained by clicking the 'Camera Toolbar' in the 'View'
       menu. The first button allows you to turn the visualization
       while it is continuously updated. 

       Many of the graphical component has a popup menu associated
       with them, - including the axis. The right mouse button will
       activate these popup menus provided that the buttons in the
       'Camera Toolbar' and 'Figure Toolbar' are deactivated. 

       Extra material can be added with the usual Matlab functions,
       as an example: 
          hold on, plot3(0.01, 0.01, 0.01, 'bs'), hold off

       Example:
         figure, brede_ta3_frame
         brede_ta3_loc([2 8 36]/1000, 'TextAbove', 'ACC, BA24')

         % If SPM99 is installed
         fp = fileparts(which('spm'));
         T1 = brede_read_analyze(fullfile(fp, 'templates', 'T1'));
         PET = brede_read_analyze(fullfile(fp, 'templates', 'PET'));
         h = figure; brede_ta3_frame
         brede_ta3_volslice(T1)
         figure, brede_vol_plot_hist(PET)
         figure(h)
         brede_ta3_volsurf(PET, 'isoabsolute', 0.0035, 'color', [ 0.8 0.6 0.1])
         brede_ta3_brodnum('zinclude', 0.001, 'color', [ 1 0 0])

       See also BREDE, BREDE_BIB, BREDE_EXP, BREDE_LOC, BREDE_VOL,
                BREDE_VTA, BREDE_TA3_FRAME, BREDE_TA3_AAL,
                BREDE_TA3_AXES, BREDE_TA3_AXLABEL, BREDE_TA3_BIB,
                BREDE_TA3_BRODNUM, BREDE_TA3_CONCORTEX,
                BREDE_TA3_CONTOUR, BREDE_TA3_CONTOUR,
                BREDE_TA3_DRURY, BREDE_TA3_EXP, BREDE_TA3_EYES,
                BREDE_TA3_FRAME, BREDE_TA3_GRID, BREDE_TA3_LIGHT,
                BREDE_TA3_LOC, BREDE_TA3_MOVIE, BREDE_TA3_PATCH,
                BREDE_TA3_PATCHWALL, BREDE_TA3_TICK, BREDE_TA3_VIEW,
                BREDE_TA3_VOLSLICE, BREDE_TA3_VOLSURF.

 $Id: brede_ta3.m,v 1.4 2007/05/24 16:14:18 fn Exp $

Cross-Reference Information

brede_ta3_frameexport/brede/brede_ta3_frame.m