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Functional activations
Movie showing the
functional activations from smelling in the human brain.
Constructed with brain activations from
the Brede
Database, rendering in the MRIcron program and
converted to a movie with ffmpeg.
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Finn Årup Nielsen,
2008, 2011.
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Active surface for the head
[1.1Mb-MPEG1]
Movie showing the
adaptation of a closed surface to the skull
of an MRI image. The surface consists of 3200 vertices that
makes almost 6400 triangles. The fitting procedure is based on
the minimization of an energy function that, for this example,
consists of a smoothing term and an attraction term.
Similar movies and a VRML file are available from the
``Geo'' project page.
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Mattias Ohlsson,
Peter Toft,
1997 April.
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Brain activation with an fMRI scanner
[284kb-MPEG1] Movie showing a
coronal slice through the visual cortex. The subject
is looking at a periodic visual stimulus and the brain
activity is monitored with a functional magnetic resonance
imaging (fMRI) brain scanner.
During activation (symbolized by the red blob in high state),
the subject is presented an alternating checker-board
pattern. In the other state, the subject is at rest.
The data is acquired using a 4 Tesla fMRI scanner (Karl
Friston, Peter Jezzard et. al).
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Ulrik Kjems,
Peter Philipsen,
1997 January
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PET brain scan
[0.5Mb-MPEG1]
Movie showing 2-dimensional
slices of reconstructed
positron emission tomography (PET) images.
The movie frames show the horizontally sliced head
sections of brain activity going upwards and then downwards.
The movie is generated from a reconstruction (filtered
backprojection) of projections [1].
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Peter Toft, The Radon Transform
- Theory and
Implementation, Ph.D. thesis.
Department of Mathematical Modelling, Technical
University of Denmark, June 1996. 326 pages.
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Peter Toft,
1995
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PET reconstruction
[2.8Mb-MPEG1] Movie showing the reconstruction process.
The movie initially shows a 2D sinogram (projections),
which is high pass
filtered for all angles.
Then the movie changes, and it is shown how the
sinogram is backprojected into the image domain.
The movie is generated found from a reconstruction
(filtered backprojection) of projections [1].
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Peter Toft, The Radon Transform
- Theory and
Implementation, Ph.D. thesis.
Department of Mathematical Modelling, Technical
University of Denmark, June 1996. 326 pages.
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Peter Toft,
1996
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Tour around surface in PET image
[2.5Mb-MPEG1] Movie showing
a tour around stacked 2D reconstructed PET images.
The colors only show reflections in surface of the brain.
The movie is generated found from a reconstruction
(filtered backprojection) of projections [1].
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Peter Toft, The Radon Transform
- Theory and
Implementation, Ph.D. thesis.
Department of Mathematical Modelling, Technical
University of Denmark, June 1996. 326 pages.
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Peter Toft,
1995
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[0.5Mb-MPEG1] Movie showing a fly by
tour in a saliency map.
The saliency map
is a representation of the importance of brain regions for
a neural network
model of an activation study. In an activation study
subjects are either
active (say, doing targetted saccadic eye movements) or
resting in a baseline
reference state. The present saliency map corresponds to a
saccade eye movement
study carried out by Dr. Ian Law at
the Cyclotron and PET Unit at the
Copenhagen University Hospital Rigshospitalet
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Niels Mørch,
1995
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[0.7Mb-MPEG1] Movie showing slices of morphed
MRI images.
To eliminate variance in functional group studies we morph
subjects anatomically.
In this demonstration the MRI scans of two subject are seen
(right and left).
The subject on the left side is then morphed to fit the subject
to the right, as seen in the center display. The morphing is
truely 3D, and based on local match.
Ulrik Kjems,
Peter Philipsen
MPEG movies from the functional neuroimaging process.
The first two movies are from the the
cyclotron room where the radioactive atoms used in the PET
scanning are produced.
The big yellow box is the actual cyclotron.
The next three movies are from the PET scanner room. The first
movie shows neurolog Ian Law instructing a subject (Finn),
in the second movie Finn is doing the task under investigation:
saccadic eye-movement.
The last shows the light emitting diodes that Finn is to follow
with his eyes.
The very last movie shows, with volume rendering, the result
from an artificial neural network analysis of the acquired
functional images.
Ulrik Kjems,
Finn Årup
Nielsen,
1996 May
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Animation of brain activation
[4.3Mb-MPEG1] Animation
showing the activation in the brain in connection with
active movement of the hands.
The animation was made by students in 1996 with the
commercial program SoftImage.
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Jakob Keis Hansen and Kasper Høy Nielsen, 1996
September
© Jakob Keis Hansen and Kasper
Høy Nielsen, 1996.
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Functional mapping by Ian Law
Volume visualization of
functional human brain mapping experiments carried out by
Dr. Ian Law of the Copenhagen University Hospital Rigshospitalet.
The result of a statistical analysis of the functional PET
images are merged with an anatomical MRI scan.
See also the subpage with more movies.
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Finn Årup Nielsen, 1995, 2009,
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CS
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Cognitive Systems
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IMM
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Department of Informatics and Mathematical Modelling
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DTU
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Technical University of Denmark
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All material on this page: © DTU, 1995-1998, 2002, 2006, 2008
except for the "animation" models
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